Udemy – Bioinformatics; Learn Docking & Mol Dynamics Simulation 2024-12

Udemy – Bioinformatics; Learn Docking & Mol Dynamics Simulation 2024-12 Downloadly IRSpace

Apr 18, 2025 - 18:15 Updated: Aug 17, 2025 - 18:19

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Udemy – Bioinformatics; Learn Docking & Mol Dynamics Simulation 2024-12

Bioinformatics; Learn Docking & Mol Dynamics Simulation, Currently, there is high use of bioinformatics tools in biological studies. This Advance Bioinformatics course includes theory and practical aspects of molecular docking and molecular dynamics simulation for you. In this course, we have tried to explain the theory and practical steps which are required to perform the above-mentioned bioinformatics techniques. We strongly believe that after having this course, you will be well versed in ligand-protein docking and molecular dynamics simulations. This course is designed to keep the need of biologists in view. We tried to explain every step in a simple and elegant way. Like our previous course, “Learn Bioinformatics From Scratch (Theory & Practical)” in this course, we took start from scratch. So, if you are new in this field then it will be easy for you to move with the flow. There is a total of seven modules with 104 lectures.

This course is a unique blend of theory and practical. We assure you that after having this course, performing molecular docking and molecular dynamics will be easy for you. We have used open-source software in this course so that you do not need to purchase any expensive software. The tools which are demonstrated in this course are Modeller, I-TASSER, Alpha-Fold (Colab), Auto-dock4, Vina, Patch-Dock, GROMACS, LigPlot, ChemSketch, OpenBabel, Pymol, and a lot more. These tools are freely available and closely related to the course material, and students will need to sign up for some tools to access it.

What you’ll learn

You will learn basics of Structural Bioinformatics Including Protein Structure Prediction
You will learn Basic Theory of Molecular Dynamics Simulations and Docking
You will Get Basic Introduction of Linux Operating Systems and Its Commands
You will have Practical Demonstration of Protein Molecular Dynamics Simulations in GROMACS
You will Learn Analysis of MD Trajectory Including RMSD, RMSF, Radius of Gyration, Solvent Accessible Surface Area, Total Number of Hydrogen Bonds etc
You will have Practical Demonstration of AutoDock, Vina, CB-Dock and PatchDock for Ligand Protein Docking
You will have Practical Demonstration of MD Simulation of Ligand-Protein Complex in GROMACS
You will Learn about Virtual Screening of Drugs (Theory and Practical)

Who this course is for

This course is for those who are interested to drug discovery.
This course is also suitable for those who want to be protein engineers and interested in denovo protein design.

Specificatoin of Bioinformatics; Learn Docking & Mol Dynamics Simulation

Publisher : Udemy
Teacher : Naeem Mahmood Ashraf
Language : English
Level : Beginner
Number of Course : 114
Duration : 8 hours and 19 minutes

Content of Bioinformatics; Learn Docking & Mol Dynamics Simulation

Bioinformatics_ Learn Docking & Mol Dynamics Simulation

Requirements

In online teaching, it’s always hard to engage the students. Therefore we have designed this course keeping the psychology of students in view. Usually, students start to lose their interest when they are stuck in a complex concept that’s why We tried to move from simple to complex easily and understandably.
You need to be familiar with very basics of protein structures. This will be more then enough for you to take start of this course. We have tried our level best to take start from scratch in every module by assuming it that our students know nothing.
Although, its not mandatory but we will encourage you to take our course “Learn Bioinformatics From Scratch (Theory and Practical)” on udemy. This course may also help you to grab the concepts in better way.